PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G424600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 264aa    MW: 29633.2 Da    PI: 5.1488
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G424600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.84.2e-34231241101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        aCaaCk++rrkC++dC+lapyfp + + +f nvhklFG+sn+lk++++l+++  +++am++++ eA+ ra dPv G+++++   ++ql+ ++
  Aqcoe7G424600.1.p  23 ACAACKYQRRKCQPDCTLAPYFPPTYQTQFLNVHKLFGVSNILKIIRNLNTQFeKDEAMRTMIQEANNRAADPVGGSHRIVCYWKHQLDLHN 114
                        7************************************************877659************************************* PP

             DUF260  92 aelallkeel 101
                        ael+l+k++l
  Aqcoe7G424600.1.p 115 AELDLVKNQL 124
                        ******9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.77222124IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3323121IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRALSNNPNN KNNHNNHGAQ AAACAACKYQ RRKCQPDCTL APYFPPTYQT QFLNVHKLFG  60
VSNILKIIRN LNTQFEKDEA MRTMIQEANN RAADPVGGSH RIVCYWKHQL DLHNAELDLV  120
KNQLAMCRAQ LQHAQQMQMN ETKLHMMNMN NMVNVPGDDD QEQEQLVLVP YVGHGHGNID  180
PSIFNVDGAS SSMSSSLLIQ QNQPFLEMLD ESLALESIEC GVKTEEEGRE QTGAEVFTEE  240
TKLIGKEEEH NFNEFAASST LTD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPGSC0003DMT4000124989e-41(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-31LOB domain-containing protein 22